PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G256200.1
Common NameB456_001G256200, LOC105768111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 95aa    MW: 10485.9 Da    PI: 8.5247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G256200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-0728612154
                        HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        ++Lr llP+ +  ++s K s + +L+++++YI+sL
  Gorai.001G256200.1 28 SKLRHLLPEiR-DNRSDKASASKVLQETCNYIRSL 61
                        79*******76.9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.858761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-72266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-72779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-42861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRSSSRQ STGGVSRISD DQIIALVSKL RHLLPEIRDN RSDKASASKV LQETCNYIRS  60
LHKEVEDLSD RLFQLLATID ADGAEATIIR SLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443316.14e-61PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX17e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0D2Q4E84e-61A0A0D2Q4E8_G
STRINGSolyc02g067380.2.12e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.19e-37bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]